The animal physiology and neuroscience major provides a program for
studying the bodily and neural functions of complex organisms. Within
this major, a student may concentrate upon more specialized areas of study,
such as human biology, neurobiology, or endocrinology. This major is most
directly applicable to health-related professions such as medicine, nursing,
dentistry, veterinary medicine, pharmacy, physical therapy, and medical
technology. Animal physiology and neuroscience majors are also well prepared
to enter other professions such as physiological research, physical education,
agriculture, and wildlife management.
Listed below are the upper-division courses required for the animal
physiology and neuroscience major. The first four requirements provide
exposure to the current understanding of subcellular function that should
be at the command of all modern biologists. Requirements 5 and 6 constitute
the core of the animal physiology and neuroscience major. By choosing
four optional four-unit upper-division biology courses (requirement 7),
a program geared to the needs of the individual student can be formulated.
This major is designed to provide students with the fundamental courses
required for entry into a school of medicine or into postgraduate training
in a wide variety of areas of biological and biomedical sciences: biochemistry,
biophysics, genetics, molecular biology, cell biology, developmental biology,
microbiology, virology, human biology (physiology, metabolism, genetic
disorders), cancer biology, pharmacology, and others. The emphasis is
on basic principles which help us understand those processes unique to
living organisms at the molecular level.
The program includes two required upper-division biology laboratory
courses to provide practical experience with modern techniques and useful
technology for those seeking positions as lab technicians in clinical
and basic research laboratories. The opportunity to select five elective
courses allows students either to seek a still broader background in a
variety of biology courses or to begin specialization in a chosen field
of study.
Upper-Division Requirements
- Organic Chemistry (Chemistry 140A and 140B)
- One chemistry laboratory: Organic Chemistry (Chemistry 143A) or Physical
Chemistry (Chemistry 105A)
- Structural Biochemistry (BIBC 100) or Physical Biochemistry (BIBC
110) or Physical Chemistry (Chemistry 126)
- Metabolic Biochemistry (BIBC 102)
- Biochemical Techniques (BIBC 103)
- Molecular Biology (BIMM 100)
- Cell Biology (BICD 110)
- Genetics (BICD 100)
- One upper-division biology lab to be chosen from the following: Signal
Transduction (BIBC 105), Eukaryotic Genetics (BICD 101), Cell Biology
(BICD 111), Plant Molecular Genetics and Biotechnology (BICD 123), Embryology
(BICD 131), Developmental Biology Lab (BICD 133), Laboratory in Molecular
Medicine (BICD 145), Recombinant DNA Techniques (BIMM 101), Advanced
Techniques in Molecular Genetics (BIMM 103), Microbiology (BIMM 121),
Environmental Microbiology (BIMM 127), Animal Physiology Lab (BIPN 105),
Neurobio-logy Lab (BIPN 145), or Organic Chemistry (Chemistry 143C).
Students completing a BISP 199 research project prior to fall 2000 may
use this to satisfy the upper-division lab requirement. Students completing
a BISP 199 fall 2000 or later may count the BISP 199 as an upper-division
elective only.
- Five additional upper-division biology courses (each course must be
at least four units) taken through the UCSD Division of Biology are
required. Only one quarter of BISP 195 and one of BISP 196 or 199 may
be applied toward the fulfillment of this requirement. Students may
use only one BISP 199 for meeting major requirements. (Subsequent quarters
of BISP 195, 196, or 199 may be applied toward college and university
requirements.)
The following courses offered by the Depart-ment of Chemistry and Biochemistry
are recommended as electives for the biochemistry and cell biology major:
Chemistry 115, 116, 122, 124, 126, 127. Please note that these courses
will not count towards the Division of Biology residency requirement.
Molecular Biology Major
Please refer to the "Admission to the Majors" notice detailed
earlier in the Division of Biology section of this catalog.
The program for molecular biology is designed to provide an intensive
exposure to the theoretical concepts and experimental techniques of molecular
biology. The concepts and techniques of molecular biology are the foundation
for the studies of all aspects of biology in modern time. A focus on molecular
biology, therefore, provides an excellent preparation for a wide range
of advanced studies including basic research, medicine, bioengineering,
and biotechnology. Considerable emphasis is placed on chemistry, biochemistry,
and genetics for students enrolled in the program. As such, it is recommended
for those students who have a particularly strong interest in this field
of study.
Lower-Division Requirements
Mathematics 20A-B, and 20C or 21C
Chemistry 6A-B-C, and lab
Physics 1A-B-C or 2A-B-C, and one lab. The 2 sequence is recommended.
BILD 1 and 2 or BILD 1 and 3
Upper-Division Requirements
- Organic Chemistry (Chemistry 140A-B)
- Organic Chemistry Laboratory (Chemistry 143A) or Physical Chemistry
Laboratory (Chemistry 105A)
- Genetics (BICD 100)
- Structural Biochemistry (BIBC 100)
- Metabolic Biochemistry (BIBC 102)
- Molecular Biology (BIMM 100)
- Cell Biology (BICD 110)
- Microbial Genetics (BIMM 122)
- Regulation of Gene Activity in Eukaryotic Cells (BIMM 112)
- Biochemical Techniques (BIBC 103)
- Recombinant DNA Techniques (BIMM 101).
- Four additional upper-division biology courses (each course must be
at least four units) taken through the UCSD Division of Biology are
required. Attention is drawn to BICD 120, BICD 122, BICD 140, BIMM 110,
and BIMM 114. Only one quarter of BISP 199 or 196 and one of BISP 195
may be used to fulfill this requirement. (Subsequent quarters of BISP
195, 196, or 199 may be applied toward college and university requirements.)
Microbiology Major
Please refer to the "Admission to the Majors" notice detailed
earlier in the Division of Biology section of this catalog.
The microbiology major is designed to prepare students for graduate
studies and for professional careers in a variety of health-related programs.
The specialization in microbiology can provide the basic background for
work in medical technology, or for further training in public health or
other health-related specialties. The program is also designed to provide
a foundation for graduate studies in microbiology, virology, and a variety
of allied fields as well as for medical and dental school.
Lower-Division Requirements
Mathematics 10A-B-C, or 20A-B, and 20C or 21C
Chemistry 6A-B-C, and one lab
Physics 1A-B-C, or 2A-B-C and one lab
BILD 1 and 2 or BILD 1 and 3
Upper-Division Requirements
- Organic Chemistry (Chemistry 140A-B)
- Organic Chemistry Laboratory (Chemistry 143A)
- Effective fall 2000, entering freshmen are required to complete Metabolic
Biochemistry (BIBC 102). Transfer students will be held to the new requirements
beginning fall 2002. Students entering prior to fall 2000 may complete
either Structural Biochemistry (BIBC 100) or Metabolic Biochemistry
(BIBC 102). Both are recommended.
- Biochemical Techniques (BIBC 103)
- Molecular Biology (BIMM 100)
- Immunology (BICD 140)
- Genetics (BICD 100)
- Bacteriology (BIMM 120)
- Laboratory in Microbiology (BIMM 121)
- Virology (BIMM 114)
- Medical Microbiology (BIMM 124)
- Three additional upper-division biology courses (each course must
be at least four units) taken through the UCSD Division of Biology are
required. These may include no more than one quarter of BISP 195 and
one quarter of BISP 196 or 199. (Subsequent quarters of 195, 196, or
199 may be applied toward college and university requirements.) Other
courses of special interest to microbiology majors are listed below:
Cell Biology (BICD 110)
Regulation of Gene Activity in Eucaryotic Cells (BIMM 112)
Microbial Genetics (BIMM 122)
Recombinant DNA Techniques (BIMM 101)
Ecology, Behavior, and Evolution Major
Please refer to the "Admission to the Majors" notice detailed
earlier in the Division of Biology section of this catalog.
This major includes the fields of population biology, ecology, conservation
biology, animal behavior, population genetics, biogeography, and evolution.
These fields have in common a focus on evolutionary processes and whole
organisms in relation to each other and to their environments. Research
careers in ecology, behavior, and evolution can be found in universities,
government agencies, and the biotechnology industry. More applied careers
for ecologists are equally varied: recent graduates now work in forestry
and wildlife management, as ecological consultants for U.S. and foreign
governments and private industry, as teachers, or in new fields such as
ecological medicine and epidemiology, environmental design and planning,
and conservation biology. Because organismal biology spans such a wide
variety of topics, this major has been designed to provide the basic fundamentals
while allowing maximum flexibility within the general topic areas.
Lower-Division Requirements
Mathematics: Three quarters of calculus are required. Mathematics
20A-B-C or 21C are strongly recommended, but Mathematics 10A-B-C are acceptable.
Chemistry: Chemistry 6A-B-C. Laboratories in chemistry are
not required.
Physics: Physics 1A-B-C or Physics 2A-B-C. Laboratories in
physics are not required.
BILD 1 and 3
Upper-Division Requirements
- Genetics (BICD 100). This course should be taken at the end of the
second year.
- Biometry (BIEB 100). This course is a prerequisite for several core
courses in ecology, behavior, and conservation, and should be taken
in the second year.
- Effective fall 2000, entering freshmen are required to complete Metabolic
Biochemistry (BIBC 102). Transfer students will be held to the new requirements
beginning fall 2002. Students entering prior to fall 2000 may complete
either Structural Biochemistry (BIBC 100) or Metabolic Biochemistry
(BIBC 102). Both are recommended. Please note that organic chemistry
(Chemistry 140A-B) is a prerequisite for biochemistry. These prerequisite
courses may be applied as elective courses under requirement number
five listed below.
- Ecology, Behavior, and Evolution. Seven courses to be chosen from
BIEB 120180 are required. At least two of these courses must be
laboratory or field courses (BIEB 121, 165, 167, and/or 179). BIEB 120,
126, 130, 140, 150, 164, 166, 178, and 180 are designed to be taken
by third-year students; BIEB 121, 154, 156, 165, 167, 176, and 180 are
designed to be taken by more advanced students. For students graduating
on or before summer 2002, however, an EBE core lecture course may be
substituted for one of the two laboratory courses. Although two laboratory
or field courses are recommended, one such course and six EBE core lecture
courses will satisfy the seven core course requirement. Laboratory courses
may be taken either concurrently with the prerequisite lecture course
if Biometry (BIEB 100) has been taken, or during the subsequent
academic year. Note that some of the laboratory courses may not be offered
every year. For that reason, it is recommended that students take as
many required courses as possible when the courses are
offered.
- Four additional upper-division courses (each course must be at least
four units) in biology, chemistry, mathematics, or related sciences
are required. Students are requried to meet the Division of Biology
residency requirement. Courses to be completed outside of the UCSD Division
of Biology must be petitioned (prior to commencement of the course)
to satisfy this requirement. Transfer courses are considered to be outside
of the division. Students participating in the Education Abroad Program
should refer to the biology section of that topic or contact the undergraduate
adviser. Courses outside the Division of Biology that are particularly
appropriate and that have been approved in the past include: Chemistry
122, 140A-B, and 149A, Mathematics 111A-B-C, 180A-B-C, and 181A-B-C;
Biological Anthropol-ogy (most courses); and Earth Sciences (most courses);
Economics 131; Scripps Institution of Oceanography (consent of instructor
required). Only one quarter of BISP 196 or 199 and one quarter of BISP
195 may be used to fulfill this requirement. (Subsequent quarters of
195, 196, or 199 may be applied toward college and university requirements.)
Certain intensive spring and summer session courses offered at various
universities and field stations throughout the country may be used to
help satisfy this requirement if prior approval is obtained from the
faculty adviser of the major by petition. A good example is the field
course in tropical biology offered in Costa Rica each spring and fall
quarter. Prerequisites for the Costa Rica program are: BIEB 100, 120
and familiarity with Spanish; some type of field research experience,
such as BIEB 121, 165 and/or 167, a field oriented BISP 199, or participation
in a field research project, is strongly recommended. Biology courses
taken through the Costa Rica program will be counted toward the major
as one core course, one laboratory/field course, and one elective. These
courses must be petitioned upon completion. Consult the Educa-tion Abroad
Program Office at the UCSD International Center for details.
A new systemwide supercourse in environment biology held at the White
Mountain Research station provides another attractive alternative to gaining
field experience. For more information, consult http://www.wmrs.edu/
Honors Thesis in Biology
Students in any one of the six biology major programs who have a 3.7
grade-point average or above in upper-division science courses, the biology
major, and overall UC at the end of their junior year are eligible to
undertake the honors thesis. This program covers the senior year of undergraduate
study and involves a maximum of twelve units of senior thesis research
(BISP 196) taken in addition to the major requirements for graduation.
(Four units of senior thesis research BISP 196 are to be taken during
three consecutive quarters.) Research is conducted under the supervision
of a faculty member of the Division of Biology only and cannot be performed
in the research labs of other departments such as the School of Medicine,
SIO, etc. If there are any questions as to which faculty members are eligible,
students should consult with Biology Student Affairs. The research will
culminate in a senior thesis and an oral report (see below). Students
who complete the program satisfactorily will have "Distinction in
Biology" recorded on their transcript. Students who fail to make
satisfactory progress will be advised to withdraw from the program and,
if eligible, will receive four units per quarter of BISP 199. Students
may also withdraw voluntarily from the program and, if eligible, receive
appropriate credit for BISP 199. Grades for BISP 196 are P, NP, or I only.
Application to the Honors Thesis Program
- Students interested in the program who are eligible as of the end
of the spring quarter of their junior year (the fourth quarter prior
to graduation) need to find a Division of Biology faculty member willing
to act in the capacity of thesis adviser and inform the Biology Student
Affairs Office of their intent.
- After an adviser is selected, the student and the adviser should complete
the Special Studies application form (available from the Biology Student
Affairs Office, 1128 Pacific Hall). The form should contain the research
proposal.
- The application form should then be submitted to the Biology Student
Affairs Office. The deadline for submitting this form is the end of
the eighth week of the quarter prior to the quarter the research will
begin.
- The application will be submitted to the honors thesis coordinator
after eligibility has been determined.
- If the student is approved for admission to the program, he or she
will then be authorized to register for BISP 196.
Entry into the second and third quarter of the program will require
submission to the honors thesis adviser of a written report in which the
student summarizes the data obtained in the first quarter. A brief oral
interview with the student on this report can also be expected. If the
progress made appears reasonable for an honors student, then the 196 petition
will be signed. If not, conversion of the 196 credit to BISP 199 will
be recommended. Completion of the program will require a final written
report by the student at the end of the third quarter in addition to an
oral presentation in the middle of the quarter to a suitable group of
faculty and students, including the honors thesis adviser.
Minor in Biology
To receive a minor from the Division of Biology, a student must complete
at least seven four-unit biology courses, including at least five four-unit
upper-division biology courses (for a total of at least twenty-eight units
of course work). Students may apply transferable biology courses from
another institution toward the lower-division requirement, after obtaining
approval from both the UCSD Division of Biology and the student's
college. Upper-division courses must be taken for letter grade. No courses
taken outside of the Division of Biology may be applied toward the biology
minor (i.e., Chemistry 140A, Psychology 106, etc.). Advanced placement
biology scores of four or five may be counted in lieu of two lower-division
biology courses for the division.
Secondary School Biology Teaching
UCSD's biology division is committed to the education of future
biology teachers and offers an excellent preparation for teaching biology
in secondary schools. If you are interested in earning a California teaching
credential from UCSD, contact the Teacher Education Program for information
about the prerequisite and professional preparation requirements. It is
recommended that you contact TEP and the Biology Student Affairs Office
early in your academic career to help you plan a suitable biology curriculum.
If you plan to get your credential at another institution, keep in mind
that a broad education in biology is the best preparation to become a
teacher.
We suggest that students take courses in plant and animal biology, microbiology,
ecology, population biology, evolution, marine biology, genetics, and
biochemistry. Courses in cellular and molecular biology are also advisable.
After completion of BILD 1, 2, and 3, a suggested program of upper-division
courses would be: BIBC 100 or 102, BICD 100, 120, 130, BIEB 120, 150,
BIPN 106, SIO 275B (or BILD 82). This would give you as a prospective
teacher the required breadth of education.
Integrated Bahelor's/Master's Degree Program
An integrated program leading to a bachelor of science degree
and a master of science degree in biology is offered to those undergraduate
students who are enrolled in any of the major programs offered by the
Division of Biology at UCSD. Qualified students are able to obtain the
M.S. degree within one year following receipt of the B.S. degree. Students
interested in applying to this program must meet with the BS/MS adviser
in the Biology Student Affairs Office BEFORE the end of their junior year.
The program is open only to UCSD undergraduates. The Division of Biology
does not have financial aid available for students enrolled in this program.
Eligibility and Enrollment
To be eligible, students must have completed the first two quarters
of their junior year in residence at UCSD and must have an overall UC
GPA of at least 3.0. Students' major GPA should be at least 3.3.
Students must demonstrate excellent performance in upper-division biology
core courses during their undergraduate program to be eligible to enroll
in biology graduate core courses.
It is the responsibility of the prospective B.S./M.S. student to select
a faculty member (from the Division of Biology) who would be willing to
serve as the student's adviser and in whose laboratory the student
would complete at least twenty-four units of research over a two-year
period. The units of research which must be completed during the student's
senior undergraduate year, must be taken IN ADDITION to the requirements
for the bachelor's degree. These units will count toward the requirements
for the master's degree only. Students must complete six consecutive
quarters of research to fulfill the research component of the program.
Any deviation from this plan, such as a break in enrollment for one or
more quarters, will be cause for the student to be dropped from the program.
Students who have been approved (by both the Division of Biology and
the UCSD Office of Graduate Admissions) for the program must enroll in
a Special Studies Course, BGGN 271, for each, and every, quarter of participation
in the B.S/M.S. program. Students can obtain the appropriate course code
and division stamp at the Biology Student Affairs Office.
Research work (BGGN 271) will be credited toward the B.S./M.S. program
requirements only if it is completed during the time a student is officially
enrolled at UCSD and has paid tuition for that quarter.
Requirements for the Master of Science Degree
- Completion of six consecutive quarters of research during the senior
undergraduate year and the graduate year.
- Completion of at least thirty-six units of graduate course work (BGGN
200-level or higher, or approved [via petition] graduate courses offered
by related departments at a similar level) during the graduate year.
The course of study must be approved by the faculty adviser.
- Twelve of the thirty-six units must be in courses other than BGGN
271 (BGGN 297 and BGGN 299 may not be used to satisfy this requirement).
- Serve as a graduate teaching assistant.
- Maintenance of a grade-point average (both overall and in the major)
of at least 3.0 for all course work, both cumulatively and for each
quarter of enrollment in the B.S./M.S. program. If the student's
GPA falls below 3.0 (for either overall or in the major), he or she
will be automatically dropped from the program.
- Completion of a thesis, with an oral presentation to, and approval
of, a three-member Thesis Committee. A student may have any regular
faculty at UCSD or any adjunct faculty as their adviser and chair of
their Thesis Committee. The Thesis Committee must contain at least two
regular faculty from the Division of Biology and no more than one adjunct
faculty can serve on the committee. If an adjunct faculty serves as
chair of the Thesis Committee, one of the biology members must serve
as co-chair.
- At least three complete, separate, and consecutive quarters of residency
as a graduate student which will commence the quarter immediately following
the quarter in which the B.S. degree is awarded. (Note: The summer session
is not considered an official quarter during the graduate year.)
- Students who have been approved for the B.S./M.S. program must provide
the Office of Graduate Admissions with a copy of their official UCSD
transcripts with the B.S. degree posted, PRIOR TO THE COMMENCEMENT OF
THE GRADUATE YEAR IN THE PROGRAM.
Non-Degree Program
The Division of Biology will accept applicants into the non-degree program
for a maximum of one year only. Qualified applicants must have at least
a 3.0 GPA in their upper-division work to be accepted. Justification will
not be made for those who fall below the GPA minimum.
Students who wish to apply to the UCSD biology Ph.D. program at a later
date should not apply for this program. However, students who have applied
to graduate or medical schools elsewhere, but have not yet been accepted,
are welcome to apply.
Once accepted into this program, the student has graduate status for
the academic year. Courses may be taken on the undergraduate or graduate
level with consent of the instructor. Students will not be assigned faculty
advisers and must make their own academic plans.
The Doctoral Program
Graduate studies for a Ph.D. degree in the Division of Biology in affiliation
with the Salk Institute are oriented mainly toward the development of
the capacity for independent research and for teaching in the biological
sciences.
The requirements for entrance to graduate study in the Division of Biology
are flexible, but a strong background in mathematics, chemistry, and physics
is recommended.
Formal course work and opportunities for dissertation research include
most basic areas of experimental biology, with emphasis in the general
areas of biochemistry, biophysics, cell biology, developmental biology,
genetics, immunology, molecular biology, neurobiology, plant molecular
biology, ecology, behavior and evolution, virology, and cancer biology.
During the first year of graduate study, each student undertakes a research
project in the laboratory of each of four to six different faculty members,
and is expected to spend a major portion of his or her academic time on
this project. The laboratories are selected by the student in consultation
with the first year adviser to provide a broad view of the research interests
of the division. The student is also expected to enroll in the first-year
graduate biology sequence which includes advanced material in genetics,
developmental biology, plant biology, neurobiology, molecular biology,
cell biology, virology, and immunology. The only other general course
requirement for the Ph.D. is a minimum of twelve units of BGGN 500 (Apprentice
Teaching in Biology). A program of further study, including seminars and
courses appropriate to a student's background and interests, is arranged
through consultation between the student and the faculty. Much reliance
is placed on informal instruction through early and close association
of the student with the faculty and research staff, and through regular
seminars. After becoming familiar with the research activities of the
faculty through the laboratory rotation program, the student begins work
on a thesis research problem of his or her choice no later than the end
of the first year. The student is free to choose for the thesis adviser
a regular member of the UCSD faculty or an adjunct member of the Division
of Biology faculty. The student is required to have completed a two-part
examination in order to be admitted to candidacy for the Ph.D. degree.
The purpose of the examinations is for the student to demonstrate competence
in the field of major interest and in related fields of biology. The major
remaining requirement for the Ph.D. degree is the satisfactory completion
of a dissertation consisting of original research carried out under the
guidance of a faculty member.
Close collaboration with members of the Department of Chemistry and
Biochemistry is a vital and stimulating aspect of the biology program.
Additional strength and breadth in biology are gained by collaborating
with the Department of Marine Biology of the Scripps Institution of Oceanography,
with the Scripps Research Insti-tute, and with the Salk Institute for
Biological Studies.
Divisional Ph.D. Time Limit Policies
Students must be advanced to candidacy by the end of four years. Total
university support cannot exceed seven years. Total registered time at
UCSD cannot exceed seven years.
Joint Doctoral Program with San Diego State University
The Division of Biology at UCSD participates in a joint graduate program
with the Department of Biology at SDSU, primarily in the areas of cell
and molecular biology, and leading to the Ph.D. degree in biology. Graduate
student participants in the joint doctoral program are required to spend
one year enrolled at UCSD; thesis research is carried out under the supervision
of the SDSU faculty.
Information regarding admission is found in the current edition of the
San Diego State University Graduate Bulletin.
Courses
Note: The division will endeavor to offer the courses as outlined
below; however, unforeseen circumstances sometimes mandate a change of
scheduled offerings, especially the quarter offered (F,W,S). Students
are strongly advised to check the Schedule of Classes or with the division's
Student Affairs Office (1128 Pacific Hall, (858) 534-0557) before relying
on the following schedule. This is of particular importance in planning
schedules for graduation requirements. It is the student's responsibility
to contact the Student Affairs Office to determine the specific quarter
that certain courses will be offered. The following schedule is tentative
for the academic year 20002001 only. It should not be assumed that
the same schedule will continue after this academic year.
Students who have satisfied the prerequisites for courses at another
college or by AP credit need to be pre-authorized to register for the
course. Please come to the Biology Student Affairs Office before your
registration time to be authorized. If the class is full please place
your name on the waitlist and attend the first class meeting.
Students who do not attend the first thirty minutes of the first scheduled
meeting (be it lab or lecture) will be considered not enrolled in the
course. Prior written notification to the instructor regarding an anticipated
absence will ensure a space. However, responsibility for officially dropping
the lab from the registrar's records belongs to the student.
IF A STUDENT DROPS A LAB COURSE AFTER THE END OF THE SECOND SESSION,
THE DEPARTMENT WILL REPORT A "W" FOR THE COURSE.
Lower-Division
BILD 1. The Cell (4)
An introduction to cellular structure and function, to biological molecules,
bioenergetics, to the genetics of both procaryotic and eucaryotic organisms,
and to the elements of molecular biology. Three hours of lecture and one
hour of recitation. Prerequisites: two quarters of general chemistry (second
quarter of chemistry may be taken concurrently). (F,W,S)
BILD 2. Multicellular Life (4)
An introduction to the development and the physiological processes of
plants and animals. Included are treatments of reproduction, nutrition,
respiration, transport systems, regulation of the internal environment,
the nervous system, and behavior. Three hours of lecture and one hour
of recitation. Prerequisites: two quarters of general chemistry (Chem.
6A-B, second quarter of chemistry [Chem. 6B] may be taken concurrently.)
(F,W,S)
BILD 3. Organismic and Evolutionary Biology (4)
The first principles of evolutionary theory, classification, ecology,
and behavior; a phylogenetic synopsis of the major groups of organisms
from viruses to primates. Three hours of lecture and one hour of lab.
Prerequisite: a full year of high school biology. Note: E.B.E.
majors should complete this course during their first year at UCSD. (F,S)
BILD 7. The Beginning of Life (4)
An introduction to the basic principles of plant and animal development,
emphasizing the similar strategies by which diverse organisms develop.
Practical applications of developmental principles as well as ethical
considerations arising from these technologies will be discussed. (S)
BILD 10. Fundamental Concepts of Modern Biology (4)
An introduction to the biochemistry and genetics of cells and organisms;
illustrations are drawn from microbiology and human biology. Three hours
of lecture and one hour of discussion. This course is designed for non-biology
students and does not satisfy a lower-division requirement for any biology
major. Note: Students may not receive credit for BILD 10 after receiving
credit for BILD 1. (F,W)
BILD 12. Neurobiology and Behavior (4)
An introduction to the organization and functions of the nervous system;
topics include molecular, cellular, developmental, systems, and behavioral
neurobiology. Three hours of lecture and one hour of discussion. This
course is designed for non-biology students and does not satisfy a lower-divison
requirement for any biology major.
BILD 14. Introduction to Plant Biology (4)
Plant biology for non-majors with emphasis on human concerns. Plants as
food for a growing population; plant growth, development and reproduction;
the soil ecosystem; genetically engineered plants; organic farming; environmental
concerns of agriculture. Three hours of lecture and one hour of discussion.
This course is designed for non-biology students and does not satisfy
a lower-division requirement for any biology major. Note: Students may
not receive credit for BILD 14 after receiving credit for BICD 120.
BILD 16. History of Life (4)
Life has a very long history on earth and this course will chronicle patterns
of biological diversity from its origin over 3 billion years ago to the
present day. Topics covered will include methods for reconstructing the
history of life on this planet, the origin and evolution of major groups
of plants and animals, dinosaur paleobiology, past environmental changes
and their effects on species and communities, and extinctions. We will
also explore how insights from the past can be used to understand how
present and future environmental changes will impact biological diversity.
This course is designed for non-biology majors. (W)
BILD 20. Human Genetics in Modern Society (4)
Fundamentals of human genetics and introduction to modern genetic technology
such as gene cloning and DNA finger printing. Applications of these techniques,
such as forensic genetics, genetic screening, and genetic engineering.
Social impacts and ethical implications of these applications. This course
is designed for non-biology students and does not satisfy a lower-division
requirement for any biology major. Note: Students may not receive credit
for BILD 20 after receiving credit for BICD 100. (S)
BILD 22. Human Nutrition (4)
A survey of our understanding of the basic chemistry and biology of human
nutrition; discussions of all aspects of food: nutritional value, diet,
nutritional diseases, public health, and public policy. Three hours of
lecture and one hour of discussion. This course is designed for non-biology
students and does not satisfy a lower-division requirement for any biology
major. Note: Students may not receive credit for BILD 22 after receiving
credit for BIBC 120. (S)
BILD 24. Biology of Human Reproduction (4)
The topics covered are: sexual development in embryo and fetus, the nature
and regulation of changes at puberty, the functioning of the mature sexual
system. Three hours of lecture. This course is designed for non-biology
students and does not satisfy a lower-division requirement for any biology
major. Note: Students may not receive credit for BILD 24 after receiving
credit for BICD 134. (W)
BILD 26. Human Physiology (4)
Introduction to the elements of human physiology and the functioning of
the various organ systems. The course presents a broad, yet detailed,
analysis of human physiology, with particular emphasis towards understanding
disease processes. Three hours of lecture and one hour of discussion.
This course is designed for non-biology students and does not satisfy
a lower-division requirement for any biology major. (F)
BILD 30. Biomedicine/Microbes (4)
General principles of microbiology with emphasis on the cell biology of
microorganisms and of the cells with which they interact in causing diseases
of man and animals. A discussion of infection by bacteria fungi and viruses,
and host responses to infection. Three hours of lecture and one hour of
discussion. This course is designed for non-biology students and does
not satisfy a lower-division requirement for any biology major. Note:
Students may not receive credit for BILD 30 after receiving credit for
BIMM 120. (W)
BILD 32. Biomedicine/Cancer (4)
An introduction to molecular, cellular, and immunological aspects of cancer
and a consideration of the sociological and psychological impact of cancer
on the individual and general society. Three hours of lecture. This course
is designed for non-biology students and does not satisfy a lower-division
requirement for any biology major. Note: Students may not receive credit
for BILD 32 after receiving credit for BIMM 134. (S)
BILD 36. AIDS Science and Society (4)
An introduction to all aspects of the AIDS epidemic. Topics include the
epidemiology, biology, and clinical aspects of HIV infection; HIV testing;
education and approaches to therapy; and the social, political, and legal
impacts of AIDS on the individual and society. In order to count for their
major, biology majors must take the upper-division course, BICD 136. (F)
BILD 90. Undergraduate Seminar (1)
This seminar is restricted to lower-division undergraduate students (freshmen
and sophomores). The course introduces current biological topics. The
topics vary with instructors and for each quarter. Examples of topics
which may be discussed are: wildlife conservation, signalling within and
between cells, mapping the human genome, etc. This course does not satisfy
any requirement for the biology major, biology minor, or college general/education.
(F,W,S)
BILD 92. Professional Topics (1)
This seminar will introduce students to the various subdisciplines and
their research methodology in the biological sciences. Emphasis will be
on bioinformatics, neurophysiology, and biotechnology. Current research
topics in the specialized areas in academe and industry will be discussed.
The role and professional identity of biologists in research, consulting,
government, management, and teaching will be reviewed. In addition, issues
surrounding professional ethics will be discussed.
BILD 95. Undergraduate Workshops (1)
The workshops will be restricted to lower-division undergraduates. The
course will introduce students to the methods of scientific research and
to a variety of research topics in the biological/biomedical sciences.
Examples of topics are: Introduction to Scientific Research, AIDS, Medical
and Social Aspects, Is the Mind the Same as the Brain, Wildlife Conservation.
(F,W,S)
BILD 99. Horticulture and Animal Husbandry (4)
The practical and theoretical aspects of plant and animal propagation,
maintenance, and behavior in a typical Southern California farm community.
Animals to be studied include bees, rabbits, sheep, goats, pigs, horses,
chickens, ducks, geese, and turkeys. Behavioral and social aspects are
emphasized. Plants to be studied include a variety of fruit trees, bushes,
and vegetables. Emphasis is on propagation and culture conditions. Each
student chooses a principal project and area of study. One hour of lecture
and fourteen hours of farm work, research and/or study per week. Oral
reports and final paper required.
Upper-Division
Biochemistry
BIBC 100. Structural Biochemistry (4)
The structure and function of biomolecules. Includes protein conformation,
dynamics, and function; enzymatic catalysis, enzyme kinetics, and allosteric
regulation; lipids and membranes; sugars and polysaccarides; and nucleic
acids. Three hours of lecture and one hour of recitation. Prerequisites:
two quarters of organic chemistry (second quarter may be taken concurrently).
(Note: Students may not receive credit for both BIBC 100 and Chem. 114A.)
(F,W,S)
BIBC 102. Metabolic Biochemistry (4)
Energy-producing pathwaysglycolysis, the TCA cycle, oxidative phosphorylation,
photosynthesis, and fatty acid oxidation; and biosynthetic pathwaysgluconeogenesis,
glycogen synthesis, and fatty acid biosynthesis. Nitrogen metabolism,
urea cycle, amino acid metabolism, neucleotide metabolism, and metabolism
of macromolecules. Three hours lecture and one hour recitation. Prerequisites:
two quarters of organic chemistry (second quarter may be taken concurrently).
Note: Students may not receive credit for both BIBC 102 and Chem. 114B.)
(F,W,S)
BIBC 103. Biochemical Techniques (4)
Introductory laboratory course in current principles and techniques to
biochemical/molecular biological research problems. Techniques include
protein and nucleic acid purification and identification methods such
as centrifugation, chromatography, and electrophoresis. Techniques covered
also include immunological, spectrophotometric, enzyme, and radioisotopes
techniques. Note: Students may not receive credit for both BIBC 103 and
Chem. 112A. (F,W,S)
BIBC 105. Signal Transduction Laboratory (6)
A laboratory course involving the application of molecular, cellular,
and biochemical techniques to explore signal transduction mechanisms in
mammalian cells. The events between ligand-biding to a cell surface receptor
and activation of gene transcription in the nucleus will be studied. Prerequisites:
BIBC 100, BIBC 103 and BIMM 100. (S)
BIBC 110. Physical Biochemistry (4)
The theory and applications of physical chemistry to biological molecules,
process and systems and techniques used in biochemistry and physiology.
Topics include reversible and irreversible thermodynamics, bioenergetics,
energy coupling and transduction, solutions of macromolecules, sedimention,
chromatography, electrophoresis, passive and active membrane transport,
spectroscopy, and chemical kinetics. Three hours of lecture and one hour
of recitation. Prerequisites: calculus and organic chemistry. (S)
BIBC 115. Computer Programming in Biology (4)
Use of computer programming in the analysis and presentation of biological
data (computation of best value and standard deviation, histogram, least
squares fitting procedure, simulation of genetic experiments, etc.) Students
learn the C++ computer language and run their programs at the Computer
Center. There are some visits to laboratories and hospitals to see applications
of computers in biology and medicine. Three hours of lecture and about
ten hours of homework per week; limited enrollment. Prerequisite: upper-division
standing or consent of instructor. (Note: Students may not receive
credit for both BIBC 115 and Chem. 134.)
BIBC 116 Evolution of Genes and Proteins (4)
The history of an organism can be found in its genome. Analyses of the
primary sequences will be used to recognize families of genes that arose
by duplication and divergence. Topics include comparisons of amino acid
sequences and three dimensional structures and range from the oldest and
most widely distributed proteins to modem mosaics. Where possible, specific
motifs and folds will be traced to their ancestral beginnings. Prerequisites:
BIBC 100, BIMM 100.
BIBC 120. Nutrition (4)
Emphasis is on the biochemical aspects of nutrition. The known functions
of vitamins, minerals, fats, carbohydrates, and protein are discussed
in terms of experiments in nutrition and an evaluation of the relation
of the knowledge to nutrition in man. Three hours of lecture. Prerequisite:
BIBC 102 (may be taken concurrently). (F)
BIBC 130 Marine Biochemistry (4)
Biochemical mechanisms of adaptation in organisms to the marine environment.
Special emphasis will be on the effects of pressure, temperature, salinity,
oxygen, and light on the physiology and biochemistry. Prerequisites:
BIBC 102 or consent of instructor.
BIBC 153. Topics in Biophysics/Photobiology (4)
(Same as Chemistry 153 and Physics 153.)
Basic principles of photobiology and photochemistry. Photochemical mechanisms
in photosynthesis. Photo-receptor pigment systems and photobiological
control mechanisms in living organisms. Prerequisite: upper-division
standing in biology, chemistry or physics, or consent of instructor.
(S)
Genetics, Cellular and Developmental Biology of Plants and Animals
BICD 100. Genetics (4)
An introduction to the principles of heredity in diploid organisms, fungi,
bacteria, and viruses. Mendelian inheritance; population genetics; quantitative
genetics; linkage; sex determination; meiotic behavior of chromosome aberrations,
gene structure, regulation, and replication; genetic code. Three hours
of lecture and one hour of recitation. Prerequisite: BILD 1 or the
equivalent. (F,W,S)
BICD 101. Eucaryotic Genetics Laboratory (4)
This course emphasizes the principles of Mendelian inheritance and requires
the student to apply both cytological and genetic analysis to the solution
of problems in transmission genetics. One hour of lecture and seven hours
of laboratory. Prerequisite: BICD 100. Attendance at the first
lecture/lab is required. Non-attendance will result in the student's
being dropped from the course roster. It is the student's responsibility
to officially drop the course. (S)
BICD 110. Cell Biology (4)
The structure and function of cells and cell organelles, cell growth and
division, motility, cell differentiation and specialization. Three hours
of lecture and one hour of recitation. Prerequisites: BIBC 100 or BIBC
102, and BICD 100. (F,W,S)
BICD 111. Cell Biology Laboratory (4)
A laboratory course in the application of cellular techniques to biological
problems. The establishment, growth, transformation, immortalization,
and senescence of mammalian cells will be studied at the molecular and
the cellular level. Ten hours of laboratory. In addition to the formal
lab hours listed above, there will be an average of two hours in which
students will be required to work in the class laboratory to complete
experiments and prepare for presentations. Prerequisite: BICD 110 (may
be taken concurrently); BIBC 103 is strongly recommended. (F) Attendance
at the first lecture/lab is required. Non-attendance will result in the
student's being dropped from the course roster. It is the student's
responsibility to officially drop the course.
BICD 120. Fundamentals of Plant Biology (4)
An introduction to the biology of plants. Basic principles of plant anatomy,
physiology, development, and diversity are covered as well as specialized
topics, including plant genetic engineering, plant disease and stress,
medicinal plants, plants and the environment, and sustainable agriculture.
Prerequisites: BILD 1 and 2. (F)
BICD 122. Plant Cellular and Molecular Biology (4)
The cellular and molecular basis of plant development, including plant
hormones, signal transduction mechanisms, light and plant growth, plant
microorganism interaction, plant transformation, genetic engineering of
plants. Prerequisite: BIBC 102 required. (W)
BICD 123. Plant Molecular Genetics and Biotechnology Laboratory (6)
Techniques in plant cell and tissue culture, plant transformation, genetic
selection and screening of mutants, host pathogen interactions, gene regulation,
organelle isolation, membrane transport. Two hours of lecture and eight
hours of laboratory each week. In addition to the formal lab hours, there
will be at least eight hours in which students will be required to work
in the class laboratory to complete experiments and prepare for presentations.
Prerequisites: upper-division standing; BICD 120 strongly recommended.
(S) Attendance at the first lecture/lab is required. Non-attendance will
result in the student's being dropped from the course roster. It
is the student's responsibility to officially drop the course.
BICD 130. Embryos, Genes, and Development (4)
Developmental biology of animals at the tissue, cellular, and molecular
levels. Basic processes of embryogenesis in a variety of invertebrate
and vertebrate organisms. Cellular and molecular mechanisms that underlie
cell fate determination and cell differentiation. More advanced topics
such as pattern formation and sex determination are discussed. Open to
upper-division students only. Three hours of lecture and one hour of recitation.
Prerequisites: BICD 100, upper-division standing, BIBC 100 or BIBC
102; BICD 110, BIMM 100 strongly recommended. (W)
BICD 131. Embryology Laboratory (6)
Descriptive and experimental embryology of marine invertebrates and of
vertebrates. One and one-half hours of lecture and ten hours of laboratory
each week. In addition to the formal lab hours, there will be at least
six and a half hours in which students will be required to work in the
class laboratory to complete experiments and prepare for presentations.
Prerequisites: BILD 1 and 2 or BIPN 100 or the equivalent. (F)
Attendance at the first lecture/lab is required. Nonattendance will result
in the student's being dropped from the course roster. It is the
student's responsibility to officially drop the course.
BICD 132. Molecular Basis of Development (4)
Explores the molecular mechanisms that underlie cell fate determination
and cell differentiation during animal development. Emphasizes the action
of key regulatory networks in directing developmental events in a variety
of vertebrate and invertebrate systems. This course is open to upper-division
students only. Three hours of lecture and one hour of recitation. Prerequisites:
BIMM 100, upper-division standing.
BICD 133. Developmental Biology Lab (6)
Explore fundamentals of embryonic development using advanced techniques
in light and fluorescent microscopy and by analyzing developmental mutants.
Course includes selecting and knocking out genes of interest followed
by phenotypic analyses. Invertebrate and vertebrate organisms covered.
Prerequisites: BILD 1 and BILD 2 or BIPN 100. BIMM 100 and BIMM 110
are recommended. (W) Attendance at the first lecture/lab is required.
Nonattendance will result in the student's being dropped from the
course roster. It is the student's responsibility to officially drop
the course.
BICD 134. Human Reproduction and Development (4)
This course is addressed to the development of the human sexual system,
including gametogenesis, fertilization, and embryo implantation. Emphasis
is placed on the physiology of reproductive functions. Three hours of
lecture and one hour of discussion. Prerequisites: BIBC 102 and BICD
100. (F)
BICD 136. AIDS Science and Society (4)
An introduction to all aspects of the AIDS epidemic. Topics will include
the epidemiology, biology, and clinical aspects of HIV infection, HIV
testing, education and approaches to therapy, and the social, political,
and legal impacts of AIDS on the individual and society. In order to count
for their major, biology majors must take the upper-division course, BICD
136. Prerequisites: BILD 1, BILD 2 recommended. (F)
BICD 140. Immunology (4)
Formation and function of the mammalian immune system, molecular and cellular
basis of the immune response, infectious diseases and autoimmunity. Prerequisites:
BICD 100, BIMM 100. BIBC 100 recommended. (F,W)
BICD 142. Topics in Immunology (4)
This course covers selected topics in molecular and cellular immunology
at a more advanced level, and is a sequel to Immunology (BICD 140). Prerequisites:
BICD 140 and upper-division standing. (S)
BICD 145 Laboratory in Molecular Medicine (4)
This course focuses upon a molecular and immunological approach to study
problems in modern medical research. The emphasis will be on novel approaches
in medicine, including lymphocyte biology, cancer biology, and gene transfer.
Prerequisites: BIBC 103, BIMM 100 (W) Attendance at the first lecture/lab
is required. Nonattendance will result in the student's being dropped
from the course roster. It is the student's responsibility to officially
drop the course.
BICD 150. Endocrinology (4)
Topics are hormone biosynthesis, metabolism and mechanisms of action,
neuroendocrinology, regulation of intermediary metabolism and body size,
water and electrolyte, calcium and phosphate homeostasis. This course
is restricted to upper-division students. Three hours of lecture and one
hour of discussion. Prerequisite: BILD 1, BILD 2. BIBC 100, BIPN 100
recommended. (F)
BICD 162. Critical Reading and Writing in the Biological Sciences
(2)
Students will read primary literature in the field of cell transport and
will be instructed how to approach a scientific paper, how to interpret
results, and how to write a paper that summarizes scientific research.
Prerequisites: Chem. 140A, 140B, 143A; either BIBC 100 or BIBC 102;
BIMM 100; either BICD 100 or BICD 110; plus one laboratory course (BIBC
103 or BIMM 101 or BIPN 105 or BIMM 121) or other example of research
experience (BISP 199 or research experience in industry). Upper-division
standing is required. (F)
BICD 170. Topics in Human Genetics (4)
An advanced course covering aspects of human genetics in detail and using
papers from the scientific literature as the major source of information.
A review of basic genetics as applied to the human species is followed
by the consideration of recent genetic insights into a number of human
conditions which illustrate the principles covered in the first part of
the course. Prerequisites: BICD 100 (may not be taken concurrently),
BIMM 100 is strongly recommended. (F)
BICD 180. Genetics of Model Organisms (4)
Survey of various organisms used in current biological/biomedical research.
Biology faculty experts discuss organisms used in their research, outline
history as genetic models, tools used for laboratory study, and contributions
to the wider understanding of biological systems. Prerequisite: BICD
100. (S)
Ecology, Behavior, and Evolution
BIEB 100. Biometry (4)
Application of statistics in biological problems. Topics: parametric statistics,
(t-test, correlation, regression, ANOVA), non-parametric statistics resampling
methods, experimental design. Mandatory homework to apply theory using
statistical Macintosh-based programs. Instructor conducts mandatory two-hour
discussion session in computer lab. Three hours of lecture and two hours
of laboratory section. Prerequisite: BILD 3 recommended. (F,W)
BIEB 102. Introductory Ecology-Organisms and Habitat (4)
This course emphasizes principles shaping organisms, habitats, and ecosystems.
Topics covered include population regulation, physiological ecology, competition,
predation, and human exploitation. This will be an empirical look at general
principles in ecology and conservation with emphasis on the unique organisms
and habitats of California. Prerequisite: BILD 3 or equivalent.
BIEB 120. General Ecology (4)
A study of the factors affecting species' distributions and abundances,
with a special emphasis on population dynamics. Three hours of lecture
and one hour of section. Prerequisite: BIEB 100 (may be taken concurrently).
(W)
BIEB 121. Ecology Laboratory (6)
A laboratory course to familiarize students with ecological problem solving
and methods. Sections will use the Macintosh computer and also perform
outdoor field work. Two hours of lecture and eight hours of laboratory
each week. In addition to the formal lab hours, there will be at least
nine hours in which students will be required to work in the class laboratory
to complete experiments and prepare for presentations. Prerequisites:
BIEB 100 and 120. (BIEB 120 may be taken concurrently). (W,S)
BIEB 126. Plant Ecology (4)
This course begins with an introduction to plant population biology including
whole-plant growth and physiology. We then focus on three classes of ecological
interactions: plant-plant competition, plant-herbivore coevolution, and
plant reproductive ecology including animal pollination and seed dispersal.
Prerequisite: BILD 3. (W)
BIEB 130. Introductory Marine Ecology (4)
An introduction to the marine environmentits physics and chemistry,
the organisms which live there, and the ecological processes affecting
the distributions and abundances of these organisms. Prerequisites:
BILD 3, high school physics, and chemistry. (F)
BIEB 140. Biodiversity (4)
An introduction to the patterns of geographic distribution and natural
history of plants and animals living in terrestrial and marine ecosystems.
We will explore: ecological and evolutionary processes responsible for
generating and maintaining biological diversity; and the nature of extinction
both in past and present ecosystem. Prerequisite: BILD 3. (S)
BIEB 150. Evolution (4)
Evolutionary processes are discussed in their genetic, historical, and
ecological contexts. Microevolution, speciation, macroevolution, and the
evolution of adaptations. Three hours of lecture and one hour of recitation.
Prerequisite: BILD 3 or equivalent. (F)
BIEB 154. Molecular Evolution (4)
This course deals with the evolution of genes and the molecules they encode.
The role of mutation, selection, and drift at the molecular level are
discussed. Molecular phylogenies, jumping genes, viral evolution, and
searches for molecular homologies are a few of the topics covered. Three
hours of lecture and one hour of discussion. Prerequisites: BIBC 102,
BICD 100, and BIMM 100 recommended.
BIEB 156. Population Genetics (4)
The first two-thirds of the course will cover the basic theory of population
genetics, including selection, genetic drift, mutation, and migration.
The last one-third of the course provides an introduction to quantitative
genetics, including measurements of heritability and selection. The theory
is illustrated throughout with biological examples. Prerequisite: BICD
100. BIEB 100 is recommended. (F)
BIEB 164. Behavioral Ecology (4)
A survey of the patterns of social behavior in animals and a discussion
of the ecological principles underlying the evolution of animal societies.
Three hours of lecture and one hour of discussion. Prerequisite: BILD
3 recommended. (W)
BIEB 165. Behavioral Ecology Laboratory (6)
This course will deal with quantitative methods for the study of animal
social behaviors. Topics include spatial patterns, mating systems, and
cooperation. The course includes both lab exercises and field trips. Two
hours of lecture and eight hours of laboratory each week. In addition
to the formal lab hours, there will be at least nine hours in which students
will be required to work in the class laboratory to complete experiments
and prepare for presentations. Prerequisites: BIEB 100 and BIEB 164.
(BIEB 164 may be taken concurrently.) (S)
BIEB 166. Animal Communication (4)
An integrated approach to animal communication, including the physics
and physiology of signals, optimal strategies for signalling and receiving,
and the ecological and social contexts of signal evolution. Three hours
of lecture and one hour of section. Prerequisite: BILD 3 recommended.
BIEB 167. Animal Communication Laboratory (6)
Laboratory exercises will introduce students to quantitative methods of
visual, auditory, and olfactory signal analysis and to lab and field studies
of animal signalling. Two hours of lecture and eight hours of laboratory
each week. In addition to the formal lab hours, there will be at least
nine hours in which students will be required to work in the class laboratory
to complete experiments and prepare for presentations. Prerequisites:
BIEB 100 and BIEB 166. (BIEB 166 may be taken concurrently.)
BIEB 170. Field Ecology (4)
Designed to instruct and demonstrate to students the value and approaches
of experimental field research using hypothetico-deductive experimental
approach. May be taken only as part of the White Mountain Research Supercourse.
Prerequisite: consent of instructor. For more information, consult
http://www.wmrs.edu
BIEB 171. Physiological Ecology (4)
An examination of the functional means by which animals and plants cope
with their environments, the physiological limits that determine the boundary
conditions of various ecological riches. Unifying principles that describe
the regulatory features of all animals and plants are emphasized. May
be taken only as part of the White Mountain Research Supercourse. Prerequisite:
consent of instructor. For more information, consult http://www.wmrs.edu
BIEB 172. Applied Conservation Biology (4)
Designed to introduce students to the complexities, and realities, of
natural resource exploitation and preservation, emphasizing the trade-offs
between economic benefits and ecosystem stability and sustainability.
May be taken only as part of the White Mountain Research Supercourse.
Prerequisite: consent of instructor. For more information, consult
http://www.wmrs.edu
BIEB 176. Conservation and the Human Predicament (4)
(Cross-listed with ANTH/BIO 132; however, biology majors must take the
course as Biology 176.) An interdisciplinary discussion of the human predicament,
the biodiversity crisis, and the importance of biological and environmental
conservation in sustaining future societies. We explore the consequences
of habitat destruction and species extinctions on the biosphere and human
welfare. Three hours of lecture and one hour of discussion. Prerequisite:
upper-division standing and BILD 3 or consent of instructor. (S)
BIEB 178. Principles of Conservation Ecology (4)
Biodiversity will ultimately be preserved in "islands" of natural
habitat. The principles of community ecology, island biogeography, and
metropopulation dynamics will underlay the management decisions regarding
the number, size, and locations of such reserves. Case studies are emphasized.
Prerequisite: BIEB 120. (S)
BIEB 179. Conservation Biology Laboratory (6)
Students will utilize, modify, and create computer software to solve conservation
biology management problems. Topics included are pedigree analysis, stochastic
population dynamics, community structure, and island biogeography. Two
hours of lecture and eight hours of laboratory each week. In addition
to the formal lab hours, there will be at least seven hours in which students
will be required to work in the class laboratory to complete experiments
and prepare for presentations. Prerequisite: BIEB 178 or BIEB 180 (may
be taken concurrently).
BIEB 180. Principle of Conservation Genetics (4)
Species preservation depends on the maintenance of genetic diversity,
which involves many aspects of population bahavior. Inbreeding, heterozygosity
loss, genetic divergence, and pedigree analysis are emphasized. Case studies
involve zoo and reserve managment. (S)
Molecular Biology, Microbiology
BIMM 100. Molecular Biology (4)
Molecular basis of biological processes, emphasizing gene action in context
of entire genome. Chromo-somes and DNA metabolism: chromatin, DNA replication,
repair, mutation, recombination, transposition. Transcription, protein
synthesis, regulation of gene activity. Procaryotes and eucaryotes Prerequisites:
BIBC 100 or BIBC 102, BICD 100. (Note: Students may not receive credit
for both BIMM 100 and Chem. 114C.)
BIMM 101. Recombinant DNA Techniques (4)
Theory and practice of DNA cloning. This course aims at providing practical
knowledge in the field of genetic engineering. Techniques covered include
construction of plasmid and phage DNA libraries, screening libraries for
desired DNA clones by hybridization methods, plasmid and phage DNA preparation,
and DNA sequencing. Two hours of lecture, one hour of discussion, and
eight hours of laboratory. Prerequisite: BIMM 100. Attendance at
the first lecture/lab is required. Non-attendance will result in the student's
being dropped from the course roster. It is the student's responsibility
to officially drop the course. Note: Students may not receive credit for
both BIMM 101 and Chem. 112B. (F,W,S)
BIMM 103. Modern Techniques in Molecular Biology (4)
This course focuses upon a combined biochemical and molecular genetic
approach to study current biological problems. Techniques include amplification
of rare nucleic acids with the polymerase chain reaction, purification
and characterization of a eukaryotic protein expressed in bacteria, in
vitro mutagenesis of DNA. One hour of lecture and eleven hours of laboratory.
Prerequisites: BIBC 103, BIMM 100. Attendance at the first lecture/lab
is required. Non-attendance will result in the student's being dropped
from the course roster. It is the student's responsibility to officially
drop the course. (W)
BIMM 110. Molecular Basis of Disease (4)
An examination of the molecular basis of human diseases. Course emphasizes
inherited human disorders, and some important diseases caused by viruses.
Focus on the application of genetic, biochemical, and molecular biological
principles to an understanding of the diseases. Three hours of lecture.
Course restricted to upper-division biology majors. Prerequisites:
BIMM 100 and BICD 100. (S)
BIMM 112. Regulation of Gene Activity in Eucaryotic Cells (4)
This course explores problems in the regulation of gene activity in eucaryotic
cells approached at the molecular level. The course includes the organization,
structure, transcription, and regulation of eucaryotic genes; mechanism
of hormonal regulation in controlling gene activity; induction of gene
expression in eucaryotic cells; role of signal transduction in controlling
gene expression; and regulation of gene activity during differentiation
in developing systems. Examples are taken from eucaryotic microorganisms,
invertebrates, as well as mammalian and other vertebrate systems. Three
hours of lecture and one hour of discussion. Prerequisite: BIMM 100.
(S)
BIMM 114. Virology (4)
An introduction to eucaryotic virology, with emphasis on animal virus
systems. Topics discussed include the molecular structure of viruses;
the multiplication strategies of the major virus families; and viral latency,
persistence, and oncology. Three hours of lecture and one hour of discussion.
Prerequisite: BIMM 100. (S)
BIMM 120. Bacteriology (4)
A discussion of the structure, growth, molecular genetics, and physiology
of procaryotic microorganisms, with emphasis on the diverse activities
of bacteria and on the interaction of various bacterial species with their
environment. Three hours of lecture and one hour recitation. Prerequisites:
organic chemistry; BIBC 100 or BIBC 102 (may be taken concurrently).
(F,W)
BIMM 121. Laboratory in Microbiology (4)
This course emphasizes fundamental principles of microbiology. Studies
with bacteria include comparative morphology and physiology; pure culture
techniques; bacterial growth; spore germination; and bacteriophage infection,
replication, and release. Additional studies on antibiotics and the use
of bioassays are included. One hour of demonstration and seven hours of
laboratory. Prerequisites: BIMM 120, may be taken concurrently, and
consent of instructor. Attendance at the first lecture/lab is required.
Nonattendance will result in the student's being dropped from the
course roster. It is the student's responsibility to officially drop
the course at the Registrar's Office. (F,W,S)
BIMM 122. Microbial Genetics (4)
Organization and function of procaryotic genetic systems including sex
factors, transduction, transformation, phage genetics, transposons, genetic
engineering. Three hours of lecture. Prerequisites: BIMM 100, BICD
100, or consent of instructor. (W)
BIMM 124. Medical Microbiology (4)
This course covers basic principles and detailed aspects of microbial
infectious diseases. Biochemical properties underlying microbial spread,
host antimicrobial and inflammatory response, immunity, and recovery are
emphasized. Emphasis is placed upon viral and bacterial diseases, including
molecular principles of pathogenesis, of host immune responses, of drug
resistance, and of viral and plasmid replication. Three hours of lecture
and one hour of discussion. Prerequisites: BIMM 100 and 120, BICD 140
is recommended. (S)
BIMM 126. Environmental Microbiology (4)
The role of microorganisms in environmental processes; fundamental aspects
of Microbiology, interaction of microbes with plants, animals and other
microbes, biogeochemical cycles, pollution, water quality, mineral recovery,
biomass energy production, microbial control of pest and disease, genetic
exchange. Prerequisites: BIBC 102 (may be taken concurrently), and
BIMM 120 recommended or consent of instructor. (W)
BIMM 127. Environmental Microbiology Laboratory (4)
This course emphasizes advanced techniques and theory in environmental
microbiology. Students will perform experiments concerning: (a) enrichment
of diverse microbes, (b) microbial enumeration and identification, (c)
metabolic and physiochemical adaptations, and (d) biotechnology, along
with an independent project. Prerequisites: consent of instructor.
(S)
BIMM 130. Microbial Physiology (4)
Prokaryotic microbial physiology will be discussed primarily from a biochemical
standpoint with emphasis on mechanism. Topics will vary from year to year
but will include the following themes: Central metabolism, bioenergetics,
biosynthesis, regulation, differentiation, prokaryotic structure-function
relationships. Prerequisites: BIBC 100 or BIBC 102 or equivalent.
(S)
BIMM 132. Molecular Biology of Human Retroviruses (3)
Replication cycle and gene regulation of HIV. Molecular approaches to
therapy and vaccines. Three hours of lecture. Prerequisite: BIMM 100.
(S)
BIMM 134. Biology of Cancer (4)
This course covers basic processes of transformation and tumor formation
in a two-part format. The first section is focused on molecular and cellular
mechanisms of carcinogenesis. The second section discusses tumor pathology
and metastasis. Open to upper-division students only. Prerequisites:
BICD 110 and BIMM 100. (S)
BIMM 140. Introduction to Bioinformatics (4)
Introduction to basic methods used in bioinformatics and computational
biology. Survey of methods used in computational analysis of DNA such
as sequence assembly, sequence comparison, gene modeling, and sequence
databases. Survey methods used in the computational analysis of protein
sequences such as alignments, motif and pattern recognition, family classification,
and protein structure prediction. Survey of organismic database methods.
Emphasis is on a broad survey of current approaches with an introduction
to statistical and computational techniques for analyzing, comparing,
and validating methods. Prerequisites: BIBC 100 or 102, BIMM 100, and
BICD 100. (BIMM 100 may be taken concurrently.) (S)
BIMM 141. Bioinformatics Laboratory (4)
Laboratory course giving hands-on exposure to topics covered in BIMM 140.
Survey of methods used in computational analysis of DNA such as sequence
assembly, sequence comparison, gene modeling, and sequence databases.
Survey of methods used in the computational analysis of protein sequences
such as alignments, motif and pattern recognition, family classification,
and protein structure prediction. Prerequisites: BIBC 100 or 102, BIMM
100, BICD 100, and BIMM 140. (S)
BIMM 142. Advanced Bioinformatics (4)
Continuation of BIMM 140 emphasizing advanced topics in bioinformatics
and computational biology. Emphasis is on computational approaches at
the level needed to design and implement new approaches. Topics: computational
and statistical approaches to computational biology including probablistic
models, machine learning approaches, and using federated resources to
develop integrated approaches to bioinformatic problems. Prerequisites:
BIBC 100 or 102, BIMM 100, BICD 100, and BIMM 140.
BIMM 150. Post-Genomics Biology (2)
This course will focus on large-scale analysis of post-genomics biological
systems. Students will be introduced to methods for analyzing changes
in gene expression, identifying protein-protein interactions, screening
for pathway inhibitors, characterizing multiprotein complexes, and probing
protein localization and function. Prerequisites: BIMM 100, BICD 100.
Animal Physiology and Neuroscience
BIPN 100. Mammalian Physiology I (4)
This course introduces the concepts of physiological regulation, controlled
and integrated by the nervous and endocrine systems. It then examines
the muscular, cardiovascular, and renal systems in detail and considers
their control through the interaction of nervous activity and hormones.
Three hours of lecture and one hour of discussion. Prerequisites: BILD
1, 2, and BIBC 100 or 102. (F,W,S)
BIPN 102. Mammalian Physiology II (4)
This course completes a survey of organ systems begun in BIPN 100, by
considering the respiratory and gastrointestinal systems. Consideration
is then given to interactions of these systems in weight and temperature
regulation, exercise physiology, stress, and pregnancy and reproduction.
Three hours of lecture and one hour of section per week. Prerequisite:
BILD 2. (F,W,S)
BIPN 105. Animal Physiology Lab (6)
Experiments are performed on membrane physiology; nerve muscle function;
cardiovascular physiology; respiratory, gastrointestinal and renal physiology.
Subjects include experimental animals and humans. Prerequisite: BIPN
100. (Students who have received credit for Biol. 152 or 154 may not
receive credit for BIPN 105.) Three hours of lecture and ten hours of
laboratory each week. In addition to the formal lab hours, there will
be at least eight hours in which students will be required to work in
the class laboratory to complete experiments and prepare for presentations.
Attendance at the first lecture/lab is required. Non-attendance will result
in the student's being dropped from the course roster. It is the
student's responsibility to officially drop the course. (F,W,S)
BIPN 106. Comparative Physiology (4)
This course examines the physiological adaptation of animals, invertebrates
and vertebrates, to their particular environmental and behavioral niches.
Structural, functional, and molecular adaptions of the basic organ systems
are discussed. Prerequisites: BILD 2, Chem. 6A-B-C or Chem. 7A-B-C.
BILD 3 is recommended.
BIPN 140. Cellular Neurobiology (4)
This course covers the biophysics of the resting and active membranes
of nerve cells. It also covers the mechanisms of sensory transduction
and neuromodulation, as well as the molecular basis of nerve cell function.
Prerequisites: BILD 1, 2; BIBC 100 or 102 recommended. (F)
BIPN 142. Systems Neurobiology (4)
This course covers integrated networks of nerve cells, including simple
circuits like those involved in spinal reflexes. We will study how information
and motor output is integrated and processed in the brain. We will also
discuss higher-level neural processing. Prerequisites: BILD 1, 2, and
BIBC 100 or 102. (W)
BIPN 144. Developmental Neurobiology (4)
Cellular and molecular basis of cell determination, neurite outgrowth,
specificity, synaptogenesis, and cell death in the brain. Prerequisites:
BILD 1, 2, and BIBC 100 or 102. BICD 100, BIPN 142 recommended. (S)
BIPN 145. Neurobiology Laboratory (4)
Basic principles of nerve and muscle physiology will be taught through
weekly exercises and individual projects. One hour of lecture and nine
hours of laboratory each week. Prerequisite: BIPN 140 or BIPN 142 or
BIPN 146 (may be taken concurrently). (F)
BIPN 146. Computational Neurobiology (4)
An exploration of computational brain models, including biophysical models
of single neurons, small neural circuits, and larger scale network models.
Prerequisite: BILD 12 or BIPN 140 or Psych. 106 or Cog. Sci. 107 recommended.
(S)
Special Courses
BISP 190. Advanced Biology Seminars for Seniors (2)
Experts in diverse areas of biology from major universities in the U.S.
and abroad will describe current research activities being conducted in
their laboratories. Relevant readings will be assigned. P/NP grades only.
Prerequisites: seniors only; concurrent enrollment in BISP 199 or consent
of instructor. (F,W,S)
BISP 195. Introduction to Teaching in Biology (4)
Introduction to the teaching of the basic course in biology. A student
under the direction of the instructor of the course is assigned one class
section and will meet one time per week with the section. A student is
required to attend the course lecture and meet with the instructor of
the course at least one time per week. Limited to upper-division students
who have a B average or higher. Three hours' lecture. (P/NP grades
only.) Prerequisites: consent of instructor and approval of department
chair. (Note: Applications for a BISP 195 are to be submitted to the
Division of Biology by the end of the sixth week of the quarter preceding
the quarter in which the BISP 195 will be completed.) (F,W,S) This course
may be counted as one of the upper-division electives for a biology major.
BISP 196. Honors Thesis in Biology (4)
Senior thesis research program. Research is conducted under the supervision
of a biology faculty member. This one-year program is taken in addition
to the major requirements for graduation. Upon satisfactory completion
of the program, students will receive "Distinction in Biology"
on their transcripts. Prerequisites: senior standing, 3.7 GPA or above;
prior selection for the program by a faculty member and approval by program
coordinator. A department stamp will be used to monitor during registration.
(F,W,S)
BISP 197. Biology Internship Program (4)
Under the joint supervision of a biology faculty adviser and a selected
industry mentor, the student will conduct independent research on a problem
in an industrial biotech laboratory. The student will gain insight into
industry research and practical biotech experience. Prerequisites:
BIBC 103 or BIMM 101, BIBC 102, BICD 100, BIMM 100, overall GPA 3.0, and
consent of the biology faculty coordinator.
BISP 199. Independent Study for Undergraduates (4)
Independent reading or research on a problem by special arrangement with
a faculty member. (P/NP grades only.) Prerequisites: overall UCSD GPA
of at least 3.0, minimum of ninety units, consent of instructor, and approval
by division chair. (Note: Applications for a BISP 199 must be submitted
to, and approved by, the Division of Biology prior to the eighth week
of the quarter preceding the quarter in which the BISP 199 will be completed.)
(F,W,S) This course may be counted as one of the upper-division electives
for a biology major, providing that no other special studies courses have
already been counted toward the major.
Graduate
BGGN 204. Topics in Community and PopulationEcology (3)
This course teaches a different topic each quarter on the theoretical
or conceptual side of community and population ecology. Students will
read materials in depth, attend weekly discussions, and explore theories
and models with statistical, analytical, and algorithmic tools of the
trade. Prerequisite: graduate standing or consent of instructor.
(S/U grades only) (Quarter offered varies and course is not offered every
year.)
BGGN 206. Topics in Biophysics and Physical Biochemistry (4)
Selection of topics of current interest. Examples: primary processes of
photosynthesis; membrane biophysics; applications of physical methods
to problems in biology and chemistry, e.g., magnetic resonance, X-ray
diffraction, fluctuation spectroscopy, optical techniques (fluorescence,
optical rotary dispersion, circular dichroism). Topics may vary from year
to year. Prerequisite: consent of instructor. (S/U grades permitted.)
This course is cross-listed with Physics 206 and Chemistry 206. (W)
BGGN 212. Special Topics in Microbiology (3)
Recent developments in prokaryotic and eukaryotic microbial research.
Topics vary from year to year but may include the following subjects:
the molecular basis of (a) sex determination, expression, and interconversion;
(b) differentiation, morphogenesis, and programmed death; (c) transcriptional
and metabolic regulation; and (d) chemical macromolecular and energy-mediated
reception, transmission, and response processes. The main thesis of the
course is that examples of complex regulatory phenomena in higher organisms
can be found in single celled organisms. This course is open to enrollment
by undergraduates. Prerequisites: BIBC 102 and BICD 100. (S/U grades
permitted.)
BGGN 213. Topics in Conservation Biology (3)
Provides in depth coverage of topics in population genetics and ecology,
community ecology, biogeography, human ecology, and ecosystem management
relevant to conservation biology. Topics vary from year to year and have
included pedigree analysis, inbreeding depression, minimum viable population
size, problems of overabundance, fragmented populations, key-stone species,
in-situ and ex-situ conservation techniques. One two-hour meeting weekly.
Prerequisite: graduate standing or consent of instructor. (S/U/ grades
only.) (S)
BGGN 214. Workshop in Behavioral Ecology (3)
Hands-on experience in the analysis, modeling, and testing of hypothesis
in behavioral ecology. Weekly group discussions and out-of-class projects
will focus on a different theme (e.g., sexual selection, quantitative
genetics, game theory, etc.) each year. Prerequisite: open to qualified
undergraduates and graduate students with consent of instructor. (S/U
grades only.) (Quarter offered varies and course is not offered every
year.)
BGGN 218. Post-Genomics Biology (2)
This course will focus on large-scale analysis of post-genomics biological
systems. Students will be introduced to methods for analyzing changes
in gene expression, identifying protein-protein interactions, screening
for pathway inhibitors, characterizing multiprotein complexes, and probing
protein localization and function.
BGGN 219. Classic Papers in Genetics (3)
The course explores, through classic papers, how genetic approaches in
the distant and near past have opened up novel areas of biology. The goal
of the course is to teach students the type of approach that allowed these
researchers to break out of old paradigms and form new ones of their own
based on genetic pathfinding. (W)
BGGN 220. Advanced Molecular Biology (6)
Provides a broad, advanced-level coverage of modern molecular biology
for first-year graduate students. Topics include prokaryotic and eukaryotic
gene structure and regulation, chromatin structure, DNA replication, translation,
mechanisms of transcription, and an introduction to viruses. OPEN ONLY
TO STUDENTS ENROLLED IN A GRADUATE DEGREE PROGRAM. (Letter grades only.)
(F)
BGGN 221. Advanced Protein Biochemistry (3)
Topics include general aspects of protein structure and biochemical approaches
to the isolation and study of proteins. This course also covers the relationship
between the structure and function of selected proteins. Detailed discussion
of modern biophysical methods to study protein-protein interactions will
be included. BGGN 220 is a co-requisite. OPEN ONLY TO STUDENTS
ENROLLED IN A GRADUATE DEGREE PROGRAM. (Letter grades only.) Corequisite:
BGGN 220. (F)
BGGN 222. Advanced Cell Biology (6)
A coverage of modern cell biology for first year graduate students. There
is an up-to-date discussion of topics such as: structure and function
of membranes; ion pumps, ion channels, transmembrane signalling; receptor
mediated endocytosis; protein targeting; the role of RER and Golgi apparatus;
the biosynthesis of intracellular organelles in animal and plant cells;
the cytoskeleton, motility, molecular motors, cell-cell interactions,
mitosis; and the control of cell division. Also included are extensive
coverage of cell signalling mechanisms and discussions on molecular approaches
to cell biology. Prerequisites: BGGN 220 and 221. OPEN ONLY TO
STUDENTS ENROLLED IN A GRADUATE DEGREE PROGRAM. (Letter grades only.)
(W)
BGGN 223. Advanced Genetics (6)
Provides a broad and extensive advanced-level coverage of molecular and
formal aspects of genetics for first-year graduate students. Topics covered
include: bacterial genetics, recombination in prokaryotes and eukaryotes,
mammalian somatic-cell genetics, developmental genetics, sex determination,
dosage compensation, and immunogenetics. Extensive coverage of the use
of model systems like Drosophila and C. elegans is included. General and
specific aspects of cellular signalling mechanisms will be covered. Prerequisites:
BGGN 220, 221 and 222. OPEN ONLY TO STUDENTS ENROLLED IN A GRADUATE
DEGREE PROGRAM. (Letter grades only.) (S)
BGGN 224. Advanced Neurobiology (3)
Course covers modern molecular, cellular, developmental, and physiological
aspects of neurobiology. Extensive discussion of original research articles
will be included. Prerequisites: BGGN 220 and 221. OPEN ONLY TO
STUDENTS ENROLLED IN A GRADUATE DEGREE PROGRAM. (Letter grades only.)
(F)
BGGN 225. Advanced Immunology (3)
The course is devoted to immunology and is organized as a combined lecture-tutorial
course stressing classical as well as current literature. Each week will
compose an independent section. Topics will include cellular interactions
involved in the immune response and the molecular biology unique to lymphoid
factor and receptors. Prerequisites: BGGN 220 and 221. OPEN ONLY
TO STUDENTS ENROLLED IN A GRADUATE DEGREE PROGRAM. (Letter grades only.)
(S)
BGGN 226. Advanced Animal Virology (3)
This course consists of a review of fundamental concepts together with
an in-depth analysis of the structure, genetics, multiplication and oncogenicity
of animal viruses. Particular emphasis will be given to the DNA and RNA
tumor viruses. The format of this section includes lectures and discussion
of selected papers. Prerequisites: BGGN 220 and 221. OPEN ONLY
TO STUDENTS ENROLLED IN A GRADUATE DEGREE PROGRAM. (Letter grades only.)
(W)
BGGN 227. Advanced Topics in Plant Biology (3)
This course covers advanced topics in plant biology in the areas of molecular
genetic developmental, and physiological biology. We will discuss plant-microbe
interactions, transposable elements, protein trafficking, ion transport,
and organ development. The format of this section includes lectures and
discussion of selected papers. Prerequisites: BGGN 220, 221, and 222.
OPEN ONLY TO STUDENTS ENROLLED IN A GRADUATE DEGREE PROGRAM. (Letter grades
only.) (W)
BGGN 228. Advanced Developmental Biology (3)
This course covers graduate level lectures on developmental biology, emphasizing
the use of genetically tractable model systems. Discussion of recent research
articles is an integral aspect of this course. Students are introduced
to classical experiments and given detailed coverage of recent fundamental
findings in developmental biology. Prerequisites: BGGN 220 and 221.
(Letter grades only.) (S)
BGGN 229. Advanced Oncogenes (3)
This course provides detailed coverage of the cellular and molecular basis
of cellular transformation and oncogenesis. There will be extensive discussion
on the role of oncogenes and their cellular counterparts. The course also
provides in-depth analysis of intracellular signal transduction mechanisms.
Prerequisites: BGGN 220, 221, and 222. (Letter grades only.) (S)
BGGN 230. Signal Transduction (3)
The course will introduce students to a variety of signal transduction
pathways and their function in the regulation of cellular processes. Special
emphasis will be given to signaling cascades regulating immunological
responses and alterations of signaling pathways during oncogenesis. (W)
BGGN 232. Human Retrovirology (3)
This course consists of both lectures and journal reviews on replication,
genetic regulation and pathogenesis of HIV and TLV, and on recent developments
of vaccine and therapy against AIDS. Open to upper-
division students with consent of instructor. Prerequisite: BIMM 100
or equivalent. (S/U grades only) (S)
BGGN 233. Cellular Immunology (3)
This course covers the molecular and cellular events in the humoral and
cellular response to antigen, transplantation biology, the structure and
function of the major histocompatibility gene complex, the T-cell receptor,
lymphokines, and the induction of immunological tolerance. It serves as
the second course in a two-part sequence. May be taken by undergraduates
who have taken Part 1 (BICD 140) and by graduate students (S/U grades
only.) (Quarter offered varies and course is not offered every year.)
BGGN 235. Biology and Biochemistry of Cancer Cells (2)
This course covers recent advances in cell biology, biochemistry, immunology,
and virology as they relate to cancer cells and their interaction with
the host. Cancer research specialists from outside will be brought in
to discuss the most recent evidence and interpretations in key areas of
cancer research. This course meets two hours per week for lecture and
discussion. It will be at an advanced graduate level but open to a limited
number of seniors (with permission of instructor) on a P/NP basis. (S/U
grades only) (Quarter offered varies, and course is not offered every
year.)
BGGN 236. Essentials of Glycobiology (2)
Molecular glycobiology encompasses studies of the structure, biosynthesis,
and biological roles of oligosaccharide units on glycoconjugates. This
course provides an overview of this rapidly evolving field with an emphasis
on the glycoconjugates of eukaryotic organisms in the animal kingdom.
(S/U grades only.) (S) This course is cross-listed with Medicine 222.
BGGN 240. Cellular Neurobiology (2)
Students read classic and modern papers that form the basis of the undergraduate
lectures (BIPN 240), which they are encouraged to attend. These papers
are presented by the students at weekly discussion sessions. Prerequisite:
consent of instructor. (S/U grades only.) (F)
BGGN 241. Neurobiology Seminar (3)
Presentation of current research by local and visiting neurobiologists.
(S/U grades only.) (F,W,S)
BGGN 242. Systems Neurobiology (2)
Students read classic and modern papers that form the basis of the undergraduate
lectures (BIPN 142), which they are encouraged to attend. These papers
are presented by the students at weekly discussion sessions. Prerequisite:
consent of instructor. (S/U grades only.) (W)
BGGN 244. Molecular/Developmental Neurobiology (2)
Students read classic and modern papers that form the basis of the undergraduate
lectures (BIPN 144), which they are encouraged to attend. These papers
are presented by the students at weekly discussion sessions. Prerequisite:
consent of instructor. (S/U grades only.) (S)
BGGN 246. Systems Neurophysiology (3)
Ways in which neurons are assembled into circuits to achieve perception
and patterned movement. (S/U grades only.) (S)
BGGN 249A-B-C. Basic Neuroscience (4-4-4)
These courses are designed for graduate students in the neurosciences
and other departments that are part of the interdisciplinary program (i.e.,
Biology, Cog. Sci.). These courses have been designed to cover as much
basic neuroscience as possible in three quarters of study. They will combine
two three-hour meetings each week with a 1.5 hour lecture and a 1.5 hour
discussion of papers. These are required courses for all first-year neurosciences
graduate students. Prerequisite: graduate student or consent of instructor.
(F,W,S)
BGGN 251. Molecular Biology (3)
The first section of this course consists of a review of fundamental concepts
in molecular biology together with an in-depth analysis of molecular biological
topics of medical importance. The second section covers the structure,
genetics, and multiplication of animal viruses, with particular emphasis
on the DNA and RNA tumor viruses. Other subjects discussed include viral
persistence, latency, and approaches to viral chemotherapy. Three hours
of lecture. Prerequisite: biochemistry. (Not open to undergraduates.)
(S/U grades only) (F)
BGGN 252. Genetics (3)
Human genetics, with emphasis on basic principles. Topics covered include
chromosome abnormalities, the mechanisms of dominant and recessive diseases,
pedigree analysis, ascertainment of linkage, the interaction of genotype
with diseases. Mechanisms of maintaining genetic diversity in human populations
will be discussed along with recent approaches to genetic counseling and
intervention. Prerequisite: consent of instructor. (Not open to
undergraduates.) (S/U grades only) (F)
BGGN 253. Immunology (3)
Graduate students will explore topics in specialized areas of immunochemistry
and cellular immunology, antigenic and molecular structure of immunoglobulin
molecules; antigenantibody interactions; cellular events in the humoral
and cellular immune responses; translation immunology. Prerequisite:
consent of instructor. The course is similar in content to BICD 140
but is accelerated in pace. (S/U grades permitted.) This course is cross-listed
with Chemistry 217.(F)
BGGN 254. Cell and Membrane Physiology (3)
This course is a survey covering current subjects in membrane biology
relevant to medicine. Subjects are: 1) membrane isolation, composition,
and structure; 2) consequences of membrane fluidity (mode of action of
anesthetics, intercellular communication, eso- and endo-cytosis biogenesis);
3) sensory perception and response (chemo- and energy reception, cellular
neurophysiology, muscle; physiology); 4) regulation of membrane function
(hormone reception, intercellular adhesion, neoplastic transformation).
Prerequisites: biochemistry and genetics. (S/U grades only)
BGGN 255. Clinical Correlates (2)
Clinical correlates stresss the close ties between clinical medicine and
basic science and the two-way interactions among practicing doctors and
research scientists. Most sessions start with the presentation of a clinical
case by an attending practitioner and an analysis by the clinician of
the basic principles demonstrated by each case. There will follow an extended
period of open discussion between basic scientists, clinicians, and students.
Prerequisites: graduate students only, BGGN 251, 252, 253, 254 to be
taken simultaneously. (S/U grades only.) This course is cross-listed
with Chemistry 277. (F)
BGGN 271. Advanced Experimental Methods in Biology (4-12)
Advanced laboratory and/or field experience in contemporary biological
methodology. Open only to students enrolled in the integrated Bachelor's/Master's
Degree Program. Prerequisites: consent of instructor and approval of
division chair. (F,W,S) (Undergraduate students: P/NP only. Graduate
students: letter grades only.)
BGGN 297. Research Conference (1-3)
Group and individual discussion of research activities and of current
literature. Prerequisite: graduate standing. (S/U grades only.)
(F,W,S)
BGGN 298. Laboratory Projects in Biology (3-12)
An introduction to contemporary laboratory techniques and research interests
through independent, original projects under the direction of individual
faculty members. Prerequisite: consent of instructor. (Letter grades
only) (F,W,S)
BGGN 299. Thesis Research in Biology (1-12)
(F,W,S)
BGGN 500. Apprentice Teaching (4)
This course involves participation in upper-division undergraduate teaching
at the level of assuming responsibility for recitation sections or laboratories
under the supervision of the responsible faculty member. Some experience
in lecturing to upper-division classes will occasionally be provided.
(S/U grades only.) (F,W,S)
BGJC 201. Journal Club in Cell Biology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (F,W,S)
BGJC 202. Journal Club in Developmental Biology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (Quarter offered is varies, and course is not offered
every year.)
BGJC 203. Journal Club in HIV Molecular Biology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (F,W,S)
BGJC 204. Journal Club in Molecular and Cellular Immunology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (F,W,S)
BGJC 205. Journal Club in Cellular Immunology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (F,W,S)
BGJC 206. Journal Club in Microbial Physiology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (S)
BGJC 207. Journal Club in Neurobiology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (F,W,S)
BGJC 208. Journal Club in Plant Molecular Biology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199. (S/U
grades only.) (F,W,S)
BGJC 209. Journal Club in Molecular and Cellular Regulation in Biology
(1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199. (S/U
grades only.) (F,W,S)
BGJC 210. Journal Club in Cell Cycle Regulation (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (F,W,S)
BGJC 211. Journal Club in Molecular Immunology (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199. (S/U
grades only.) (F,W,S)
BGJC 212. Journal Club in Genetics (1)
Weekly presentations and discussions pertaining to research results reported
in recently published literature. Prerequisites: none for graduate
students. Under-graduates must be seniors or enrolled in BISP 199.
(S/U grades only.) (F,W,S)
BGRD 202. Research Discussion in Early Amphibian Neurogenesis (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 203. Research Discussion in Development of Dictyostelium (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 204. Molecular Biology of the Cell (1)
Research reports and discussions based on recent experimental results
in cell biology, oncogenesis, genetics, molecular biology and development.
Stu-dents are expected to present and discuss their own new data and the
recent data of others. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 205. Research Discussion in Plant Membrane Biology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 206. Research Discussion in Metals in Biology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 207. Research Discussion in Neuronal Pattern Generation (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 208. Research Discussion in Mammalian Molecular Biology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 209. Research Discussion in AIDS (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 210. Research Discussion in Virology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 211. Research Discussion in Developmental Cellular Neurobiology
(1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 212. Research Discussion in Behavior and Development of Simple
Nervous Systems (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Under-graduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 213. Research Discussion in Golgi Structure and Function (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 214. Research Discussion in Development and Function of the Immune
System (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 215. Research Discussion in Lymphocyte Biology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 216. Research Discussion in Molecular and Cell Biology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 217. Research Discussion in Plant Membranes and Organelles (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 218. Research Discussion in Plant Molecular Genetics (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 219. Research Discussion in MolecularBiophysics (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 220. Research Discussion in Advanced Evolutionary Biology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 221. Research Discussion in Behavioral Ecology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 222. Research Discussion in Evolutionary Molecular Ecology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 223. Research Discussion in Ecology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 224. Research Discussion in Plant Population Biology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 225. Research Discussion in Genetic Variation (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 226. Research Discussion in Conservation Genetics (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 227. Research Discussion in Intracellular Signalling (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 228. Research Discussion in Drosophila Developmental Biology
(1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 229. Research Discussion in Drosophila Neurobiology (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 230. Research Discussion in Cell Signalling Pathways (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 231. Research Discussion in Nuclear Transport and Function (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 232. Research Discussion in Chromatin and Transcription Regulation
(1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 233. Research Discussion in Cell Cycle Motility (1)
Presentations of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGRD 234. Research Discussion in Cell Signalling in Drosophila (3)
Presentation of new research results and discussions of closely related
published reports. All students are expected to report on their own research
findings each quarter. Prerequisites: none for graduate students. Undergraduates
must be seniors or enrolled in BISP 199. (S/U grades only.)
BGSE 200. Seminar in Biology (1)
Invited speakers from the U.S. and abroad, who are leaders in various
aspects of biological research, describe their current research. Prerequisites:
none for graduate students. Undergraduates must be seniors or enrolled
in BISP 199. (S/U grades only.) (F,W,S)
BGSE 201. Seminar in Molecular Biology (1)
Invited speakers from the U.S. and abroad, who are leaders in various
aspects of biological research, describe their current research. Prerequisites:
none for graduate students. Undergraduates must be seniors or enrolled
in BISP 199. (S/U grades only.) (F,W,S)
BGSE 202. Seminar in Immunology (1)
Invited speakers from the U.S. and abroad, who are leaders in various
aspects of biological research, describe their current research. Prerequisites:
none for graduate students. Undergraduates must be seniors or enrolled
in BISP 199. (S/U grades only.) (F,W,S)
BGSE 203. Seminar in Population Biology (1)
Invited speakers from the U.S. and abroad, who are leaders in various
aspects of biological research, describe their current research. Prerequisites:
none for graduate students. Undergraduates must be seniors or enrolled
in BISP 199. (S/U grades only.)
BGSE 204. Seminar in Developmental Genetics (1)
Invited speakers from the U.S. and abroad, who are leaders in various
aspects of biological research, describe their current research. Prerequisites:
none for graduate students. Undergraduates must be seniors or enrolled
in BISP 199. (S/U grades only.) (F,W,S)
BGSE 205. Graduate Research Seminar (1)
Discussions of recent research in various aspects of biological research
conducted by third- and fourth-year doctoral students in the Division
of Biology. (S/U grades only.) (F,W,S)